Variant report

Variant	rs3986399
Chromosome Location	chr11:4241008-4241009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1053189	chr11:4123119-4359044	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1053482	chr11:4138062-4276133	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3380413	chr11:4159374-4323846	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv8777	chr11:4159953-4387268	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv34983	chr11:4162474-4325792	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2757417	chr11:4162477-4325792	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv467662	chr11:4185595-4272343	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv553151	chr11:4185595-4272343	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv469627	chr11:4186981-4336490	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv482725	chr11:4186981-4336490	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv428799	chr11:4186981-4336490	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv471670	chr11:4186982-4336490	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv469932	chr11:4200169-4272343	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv1041957	chr11:4213658-4470615	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv540913	chr11:4213658-4470615	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	esv1811486	chr11:4221216-4443039	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	esv1814887	chr11:4221216-4510188	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv427881	chr11:4221216-4510188	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv1035762	chr11:4236709-4336517	Enhancers Weak transcription	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
24	nsv1038465	chr11:4236709-4346797	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
25	nsv1037718	chr11:4236709-4359044	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
26	esv2760194	chr11:4236709-4384797	Enhancers Weak transcription	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
27	esv3376935	chr11:4237976-4241574	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
28	esv3326320	chr11:4237976-4248074	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
29	esv3375820	chr11:4237976-4252774	Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
30	nsv982973	chr11:4238097-4251821	Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
31	nsv1054223	chr11:4238406-4346797	Enhancers Weak transcription	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
32	nsv1053588	chr11:4238406-4359044	Enhancers Weak transcription	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
33	nsv1035329	chr11:4238406-4388905	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
34	nsv1051869	chr11:4238406-4389589	Enhancers Weak transcription Active TSS	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
35	nsv896897	chr11:4238930-4367196	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
36	nsv896898	chr11:4238930-4377205	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
37	nsv896899	chr11:4238930-4387760	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
38	nsv896900	chr11:4238930-4387760	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
39	esv1812263	chr11:4238988-4378358	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
40	esv1826290	chr11:4238988-4387439	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
41	esv1827557	chr11:4238988-4387439	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
42	esv1807257	chr11:4238988-4393774	Enhancers Active TSS Weak transcription	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
43	esv2760621	chr11:4239054-4364699	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
44	esv15710	chr11:4239062-4387669	Weak transcription Enhancers	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
45	esv1830119	chr11:4239188-4387239	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
46	esv1833458	chr11:4239188-4387239	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
47	esv1811161	chr11:4239188-4393574	Enhancers Weak transcription Active TSS	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
48	esv1805547	chr11:4239188-4395793	Enhancers Weak transcription Active TSS	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
49	esv1798009	chr11:4239340-4369006	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
50	esv1829165	chr11:4239340-4376254	Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4241000-4241400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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