Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1041109	0.87[EUR][1000 genomes]
rs1041110	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10749703	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11206712	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11206713	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11206714	0.87[EUR][1000 genomes]
rs1156337	0.85[EUR][1000 genomes]
rs1156338	0.85[EUR][1000 genomes]
rs1416130	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1547157	0.86[EUR][1000 genomes]
rs1933625	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1998715	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2192106	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2211047	0.85[EUR][1000 genomes]
rs2404391	0.86[EUR][1000 genomes]
rs4926706	0.87[EUR][1000 genomes]
rs4926707	0.84[EUR][1000 genomes]
rs4927290	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61772104	0.85[EUR][1000 genomes]
rs6588596	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588597	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588600	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6675960	0.83[EUR][1000 genomes]
rs6677449	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7532703	0.87[EUR][1000 genomes]
rs7534031	0.86[EUR][1000 genomes]
rs973501	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56440000-56451400	Weak transcription	Ovary	ovary
2	chr1:56441400-56446400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:56441600-56446800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:56445600-56447400	Enhancers	Hela-S3	cervix
5	chr1:56445800-56447800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:56446000-56447400	Enhancers	NHLF	lung
7	chr1:56446200-56447400	Enhancers	Osteobl	bone
8	chr1:56446200-56447800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56446200-56447800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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