Variant report

Variant	rs400309
Chromosome Location	chr6:14912911-14912912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs394043	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs430277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs438857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14902600-14921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:14905800-14924800	Weak transcription	Esophagus	oesophagus
4	chr6:14909200-14913200	Weak transcription	Small Intestine	intestine
5	chr6:14909400-14913600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:14910200-14913400	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:14910400-14913000	Enhancers	Fetal Thymus	thymus
8	chr6:14910400-14913200	Enhancers	K562	blood
9	chr6:14910400-14913400	Enhancers	Thymus	Thymus
10	chr6:14910600-14913200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:14911400-14913200	ZNF genes & repeats	GM12878-XiMat	blood
12	chr6:14911400-14913400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:14911400-14916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:14911600-14913400	Enhancers	Primary B cells from cord blood	blood
15	chr6:14911600-14913400	Enhancers	Colon Smooth Muscle	Colon
16	chr6:14911800-14913000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:14911800-14913200	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:14911800-14913600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:14912000-14913200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:14912000-14913200	Enhancers	Fetal Kidney	kidney
21	chr6:14912000-14913400	Enhancers	Placenta	Placenta
22	chr6:14912000-14914000	Enhancers	Fetal Stomach	stomach
23	chr6:14912200-14913600	Enhancers	Rectal Smooth Muscle	rectum
24	chr6:14912400-14913000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:14912400-14913000	Enhancers	Stomach Mucosa	stomach
26	chr6:14912400-14913400	Enhancers	Pancreas	Pancrea
27	chr6:14912400-14914000	Enhancers	Ovary	ovary
28	chr6:14912600-14913800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:14912800-14913000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:14912800-14913000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:14912800-14913000	Enhancers	Right Atrium	heart
32	chr6:14912800-14913200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:14912800-14913200	Enhancers	Gastric	stomach
34	chr6:14912800-14916400	Weak transcription	Spleen	Spleen
35	chr6:14912800-14921400	Weak transcription	H1 Cell Line	embryonic stem cell

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