Variant report

Variant	rs4015271
Chromosome Location	chr11:85293107-85293108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11606688	0.87[ASN][1000 genomes]
rs1425223	0.91[AFR][1000 genomes]
rs1504029	0.80[AFR][1000 genomes]
rs1847433	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2081445	0.84[ASN][1000 genomes]
rs2162055	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2840343	0.80[ASN][1000 genomes]
rs286507	0.83[ASN][1000 genomes]
rs286511	0.83[ASN][1000 genomes]
rs3781815	0.82[AFR][1000 genomes]
rs3817087	0.82[AFR][1000 genomes]
rs4301809	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4943922	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4943923	0.82[AFR][1000 genomes]
rs4944523	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4944526	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs497698	0.80[AFR][1000 genomes]
rs522604	0.84[ASN][1000 genomes]
rs552013	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs55739259	0.88[AFR][1000 genomes]
rs55841425	0.84[ASN][1000 genomes]
rs57245119	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57296431	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs57549298	0.83[ASN][1000 genomes]
rs592460	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61114547	0.81[ASN][1000 genomes]
rs61342895	0.81[ASN][1000 genomes]
rs61567739	0.87[ASN][1000 genomes]
rs631375	0.82[AFR][1000 genomes]
rs7113528	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7115250	0.81[AMR][1000 genomes]
rs7122887	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7925739	0.85[ASN][1000 genomes]
rs7940714	0.89[ASN][1000 genomes]
rs7948778	0.82[AFR][1000 genomes]
rs7949567	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs881120	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4015271	SYTL2	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85284400-85293800	Weak transcription	Ovary	ovary
2	chr11:85291400-85299000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:85292400-85300000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:85292400-85300000	Weak transcription	Aorta	Aorta

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