Variant report

Variant	rs286511
Chromosome Location	chr11:85224799-85224800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1046216	0.90[CHB][hapmap]
rs1072253	0.85[AMR][1000 genomes]
rs1118578	0.85[AMR][1000 genomes]
rs11234359	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs11603256	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs11603984	0.81[AMR][1000 genomes]
rs11605203	0.85[AMR][1000 genomes]
rs11821005	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1192	0.81[CHB][hapmap]
rs1213257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1214001	0.81[CHB][hapmap]
rs1237203	0.95[CHB][hapmap]
rs1354397	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs1605898	0.82[EUR][1000 genomes]
rs166998	0.85[AMR][1000 genomes]
rs17208492	0.81[CHB][hapmap]
rs1847433	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs188255	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2081445	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2196168	0.95[CHB][hapmap]
rs2290823	0.81[CHB][hapmap]
rs2467059	0.81[CHB][hapmap]
rs2512803	0.81[AMR][1000 genomes]
rs2840343	0.83[EUR][1000 genomes]
rs286048	0.82[AMR][1000 genomes]
rs286499	0.85[CHB][hapmap]
rs286500	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs286506	0.89[ASN][1000 genomes]
rs286507	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs286508	0.81[AMR][1000 genomes]
rs286510	0.83[AMR][1000 genomes]
rs286513	0.86[CHB][hapmap]
rs286515	0.85[CHB][hapmap]
rs286526	0.86[AMR][1000 genomes]
rs286528	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286535	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs286537	0.85[AFR][1000 genomes]
rs286542	0.85[AMR][1000 genomes]
rs290173	0.82[CHB][hapmap]
rs290180	0.82[CHB][hapmap]
rs290183	0.85[CHB][hapmap]
rs290184	0.95[CHB][hapmap]
rs290185	0.95[CHB][hapmap]
rs290186	0.81[CHB][hapmap]
rs290200	0.82[CHB][hapmap]
rs290202	0.86[CHB][hapmap]
rs370385	0.90[CHB][hapmap]
rs3753050	0.95[CHB][hapmap]
rs3781815	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs3824956	0.95[CHB][hapmap]
rs3862782	0.95[CHB][hapmap]
rs4015271	0.83[ASN][1000 genomes]
rs431606	0.82[CHB][hapmap]
rs4943918	0.85[CHB][hapmap]
rs4943922	0.85[ASN][1000 genomes]
rs4944518	0.90[ASN][1000 genomes]
rs4944523	0.86[ASN][1000 genomes]
rs4944529	0.81[CHB][hapmap]
rs4944531	0.81[CHB][hapmap]
rs554536	0.80[ASN][1000 genomes]
rs55841425	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56273824	0.85[AMR][1000 genomes]
rs56321405	0.81[AMR][1000 genomes]
rs56579	0.81[CHB][hapmap]
rs57245119	0.88[ASN][1000 genomes]
rs57549298	0.83[EUR][1000 genomes]
rs59082411	0.85[AMR][1000 genomes]
rs592460	0.90[CHB][hapmap]
rs60484561	0.80[AMR][1000 genomes]
rs61567739	0.84[ASN][1000 genomes]
rs7107788	0.95[CHB][hapmap]
rs7110363	0.86[CHB][hapmap]
rs7116195	0.95[CHB][hapmap]
rs7119372	0.85[AMR][1000 genomes]
rs7119617	0.81[CHB][hapmap]
rs7120523	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7122887	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7127991	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs720496	0.82[EUR][1000 genomes]
rs73499156	0.83[AMR][1000 genomes]
rs73499163	0.85[AMR][1000 genomes]
rs7925739	0.83[EUR][1000 genomes]
rs7940714	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7943586	0.81[CHB][hapmap]
rs7948778	0.81[CHB][hapmap]
rs7949567	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs881120	0.95[CHB][hapmap]
rs881121	0.81[CHB][hapmap]
rs947861	0.81[CHB][hapmap]
rs947863	0.81[CHB][hapmap]
rs956202	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs979704	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85195200-85238200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:85220600-85233000	Weak transcription	Pancreas	Pancrea

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