Variant report

Variant	rs720496
Chromosome Location	chr11:85158667-85158668
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84911038..84912682-chr11:85158292..85160996,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1046216	0.90[CHB][hapmap]
rs10751124	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898392	0.91[ASN][1000 genomes]
rs11603256	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs11821005	0.82[EUR][1000 genomes]
rs1213257	0.82[EUR][1000 genomes]
rs1517308	0.86[JPT][hapmap]
rs158089	0.84[ASN][1000 genomes]
rs1605898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1847433	0.82[EUR][1000 genomes]
rs2081445	0.82[EUR][1000 genomes]
rs2449987	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs286045	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286047	0.82[EUR][1000 genomes]
rs286048	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286511	0.82[EUR][1000 genomes]
rs286515	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs286528	0.84[EUR][1000 genomes]
rs3781815	0.84[CEU][hapmap];0.90[CHB][hapmap]
rs3862782	0.95[CHB][hapmap]
rs393308	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs454388	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs471786	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs472630	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs530323	0.82[JPT][hapmap]
rs552017	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs55841425	0.82[EUR][1000 genomes]
rs575050	0.86[CHB][hapmap]
rs580188	0.86[JPT][hapmap]
rs592460	0.91[CHB][hapmap]
rs7107788	0.95[CHB][hapmap]
rs7110363	0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7116340	0.87[AMR][1000 genomes]
rs7120523	0.81[EUR][1000 genomes]
rs7949567	0.82[EUR][1000 genomes]
rs881120	0.95[CHB][hapmap]
rs956202	0.84[CEU][hapmap];0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv898045	chr11:85094601-85168570	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85155800-85160800	Weak transcription	Psoas Muscle	Psoas

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