Variant report

Variant	rs530323
Chromosome Location	chr11:84974898-84974899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84969189..84971116-chr11:84973618..84975887,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10501590	0.84[ASW][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs10792810	0.89[ASW][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs10898372	0.82[ASN][1000 genomes]
rs1400630	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1517308	0.89[ASW][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1517310	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1517317	0.87[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap]
rs1914375	0.94[ASW][hapmap];0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2000962	0.84[ASW][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap]
rs2203702	0.89[ASW][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs2449987	0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs286052	0.86[ASN][1000 genomes]
rs405726	0.81[ASN][1000 genomes]
rs450444	0.81[ASN][1000 genomes]
rs471786	0.89[ASW][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs472630	0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs476791	0.86[JPT][hapmap]
rs4944512	0.84[ASW][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs552017	0.81[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.85[LWK][hapmap];0.88[ASN][1000 genomes]
rs552373	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs556710	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs563788	0.88[ASN][1000 genomes]
rs580188	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs601857	0.89[ASW][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap]
rs789600	0.85[ASN][1000 genomes]
rs7935720	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs938727	0.89[ASW][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9734338	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84965200-84977000	Weak transcription	Aorta	Aorta
2	chr11:84967800-85019400	Weak transcription	Ovary	ovary
3	chr11:84969400-84977200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:84972800-84980200	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:84974600-84976000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:84974800-84975600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:84974800-84978600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:84974800-84998400	Weak transcription	HSMMtube	muscle

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