Variant report

Variant	rs552373
Chromosome Location	chr11:84979582-84979583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1517308	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1517310	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2449987	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs286045	0.81[ASN][1000 genomes]
rs286048	0.81[ASN][1000 genomes]
rs454388	0.81[ASN][1000 genomes]
rs471786	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs472630	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs530323	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs552017	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs556710	0.85[ASN][1000 genomes]
rs563788	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs580188	0.95[ASN][1000 genomes]
rs789600	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs938727	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84967800-85019400	Weak transcription	Ovary	ovary
2	chr11:84972800-84980200	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:84974800-84998400	Weak transcription	HSMMtube	muscle
4	chr11:84975200-84982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:84979000-84979600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:84979000-84979600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:84979000-84980800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:84979200-84980400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:84979400-84979600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:84979400-84980600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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