Variant report

Variant	rs286048
Chromosome Location	chr11:85078604-85078605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10501590	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10751124	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10792810	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs1213257	0.82[AMR][1000 genomes]
rs1400630	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1517308	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1517310	0.85[CHB][hapmap];0.96[JPT][hapmap]
rs1517317	0.86[JPT][hapmap]
rs1605898	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1914375	0.91[JPT][hapmap]
rs2000962	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs2203702	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2449987	0.95[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs286045	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286047	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286050	0.82[ASN][1000 genomes]
rs286051	0.82[ASN][1000 genomes]
rs286052	0.82[ASN][1000 genomes]
rs286507	0.81[AMR][1000 genomes]
rs286511	0.82[AMR][1000 genomes]
rs286515	0.81[AMR][1000 genomes]
rs371815	0.81[ASN][1000 genomes]
rs393308	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs405726	0.90[ASN][1000 genomes]
rs450444	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs454388	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471786	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs472630	0.95[CHB][hapmap];0.96[JPT][hapmap];0.84[ASN][1000 genomes]
rs4944512	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs530323	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs552017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs552373	0.81[ASN][1000 genomes]
rs563788	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs580188	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs601857	0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap]
rs7111281	0.80[CHB][hapmap]
rs720496	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs789600	0.81[ASN][1000 genomes]
rs7935720	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs938727	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs9734338	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85060200-85079000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:85069600-85079800	Weak transcription	Aorta	Aorta

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