Variant report

Variant	rs286050
Chromosome Location	chr11:85079419-85079420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10792810	0.82[CHB][hapmap]
rs1517317	0.87[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs158089	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1914375	0.87[ASW][hapmap];0.82[CEU][hapmap];0.90[CHB][hapmap]
rs2000962	0.82[CHB][hapmap]
rs2203702	0.82[CHB][hapmap]
rs2449987	0.86[CHB][hapmap]
rs286045	0.82[ASN][1000 genomes]
rs286047	0.88[ASN][1000 genomes]
rs286048	0.82[ASN][1000 genomes]
rs286051	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286052	0.82[ASN][1000 genomes]
rs371815	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs405726	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs450444	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs454388	0.82[ASN][1000 genomes]
rs471786	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs472630	0.86[CHB][hapmap]
rs4944512	0.82[CHB][hapmap]
rs530323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs552017	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs580188	0.89[CHB][hapmap]
rs938727	0.82[CHB][hapmap]
rs9734338	0.82[CEU][hapmap];0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85069600-85079800	Weak transcription	Aorta	Aorta
2	chr11:85079000-85080000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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