Variant report

Variant	rs11603256
Chromosome Location	chr11:85337366-85337367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85335097..85341629-chr11:85372332..85377145,15	MCF-7	breast:
2	chr11:85337127..85343160-chr11:85357064..85364111,20	MCF-7	breast:
3	chr11:85336278..85337921-chr11:85339997..85342218,2	K562	blood:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction
ENSG00000171202	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1046216	0.83[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11600919	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11606688	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11821005	0.87[ASN][1000 genomes]
rs1237203	1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1354397	0.81[CHB][hapmap]
rs17148254	0.84[AFR][1000 genomes]
rs2081445	0.80[ASN][1000 genomes]
rs2117312	0.89[ASN][1000 genomes]
rs2196168	0.88[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2290823	0.94[ASW][hapmap];0.86[LWK][hapmap];0.82[YRI][hapmap]
rs2840343	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs290173	0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs290174	0.81[ASN][1000 genomes]
rs290179	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs290180	0.86[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs290181	0.89[ASN][1000 genomes]
rs290183	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs290184	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs290185	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs290190	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs290195	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs290200	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs290202	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs370385	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs3753050	0.88[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3781815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3817087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824956	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862782	0.88[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4301809	0.85[ASN][1000 genomes]
rs431606	0.86[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs491867	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4944526	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4944530	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496187	0.81[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap]
rs522604	0.93[ASN][1000 genomes]
rs540063	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs550404	0.95[JPT][hapmap]
rs552013	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs556669	0.95[JPT][hapmap]
rs55841425	0.80[ASN][1000 genomes]
rs57296431	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs575013	0.81[JPT][hapmap]
rs575050	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs57549298	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs580459	0.95[JPT][hapmap]
rs589327	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs592460	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs597480	0.95[JPT][hapmap]
rs61114547	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61567739	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs631375	0.83[AFR][1000 genomes]
rs631410	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs641393	0.95[JPT][hapmap]
rs647912	0.81[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap]
rs679204	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs680498	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7107788	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7113528	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7116195	0.88[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7119617	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs7122887	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7925739	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7940714	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7943586	1.00[ASW][hapmap];0.91[LWK][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs881120	0.83[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs956202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85317800-85337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:85320000-85337600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:85320000-85337600	Weak transcription	Psoas Muscle	Psoas
4	chr11:85323400-85337600	Weak transcription	Left Ventricle	heart
5	chr11:85323800-85337600	Weak transcription	Liver	Liver
6	chr11:85324800-85338000	Weak transcription	Fetal Brain Male	brain
7	chr11:85331200-85338200	Weak transcription	Lung	lung
8	chr11:85332200-85337600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:85336000-85337400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:85336000-85341000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:85336200-85337600	Enhancers	Fetal Lung	lung
12	chr11:85336200-85339000	Active TSS	Right Atrium	heart
13	chr11:85336200-85340600	Active TSS	Ovary	ovary
14	chr11:85336200-85341400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr11:85336400-85337600	Enhancers	Brain Hippocampus Middle	brain
16	chr11:85336400-85337600	Enhancers	Colon Smooth Muscle	Colon
17	chr11:85336400-85337600	Enhancers	Rectal Smooth Muscle	rectum
18	chr11:85336400-85337800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:85336400-85340400	Active TSS	Aorta	Aorta
20	chr11:85336600-85337400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:85336600-85337600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:85336600-85338000	Weak transcription	GM12878-XiMat	blood
23	chr11:85336600-85338200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr11:85336800-85337400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:85336800-85337600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:85336800-85337600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:85336800-85337600	Enhancers	Fetal Stomach	stomach
28	chr11:85336800-85337800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:85336800-85338000	Enhancers	Brain Substantia Nigra	brain
30	chr11:85336800-85338000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:85337000-85337400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:85337000-85337400	Weak transcription	Brain Anterior Caudate	brain
33	chr11:85337000-85337400	Enhancers	Fetal Heart	heart
34	chr11:85337000-85337600	Active TSS	Brain Cingulate Gyrus	brain
35	chr11:85337000-85337600	Enhancers	NHDF-Ad	bronchial
36	chr11:85337000-85337800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr11:85337000-85337800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:85337000-85340200	Active TSS	Stomach Smooth Muscle	stomach
39	chr11:85337200-85337400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:85337200-85337600	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:85337200-85337600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:85337200-85337600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:85337200-85338000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:85337200-85338200	Enhancers	Dnd41	blood
45	chr11:85337200-85338400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:85337200-85340800	Active TSS	Right Ventricle	heart
47	chr11:85337200-85341000	Active TSS	NHLF	lung

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