Variant report

Variant	rs290181
Chromosome Location	chr11:85387698-85387699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85383482..85385158-chr11:85387525..85389056,2	MCF-7	breast:
2	chr11:85385043..85387770-chr11:85389067..85391725,3	MCF-7	breast:
3	chr11:85374373..85376411-chr11:85385516..85387778,3	MCF-7	breast:
4	chr11:85375502..85378445-chr11:85386571..85388594,2	K562	blood:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1046216	0.88[ASN][1000 genomes]
rs11600919	0.88[ASN][1000 genomes]
rs11603256	0.89[ASN][1000 genomes]
rs11606688	0.80[ASN][1000 genomes]
rs1237203	0.82[ASN][1000 genomes]
rs2117312	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196168	0.83[ASN][1000 genomes]
rs290171	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs290179	0.83[ASN][1000 genomes]
rs290180	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs290183	0.88[ASN][1000 genomes]
rs290184	0.90[ASN][1000 genomes]
rs290185	0.82[ASN][1000 genomes]
rs370385	0.82[ASN][1000 genomes]
rs3753050	0.90[ASN][1000 genomes]
rs3781815	0.87[ASN][1000 genomes]
rs3817087	0.89[ASN][1000 genomes]
rs3824956	0.89[ASN][1000 genomes]
rs3862782	0.88[ASN][1000 genomes]
rs431606	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944530	0.89[ASN][1000 genomes]
rs522604	0.83[ASN][1000 genomes]
rs552013	0.86[ASN][1000 genomes]
rs57296431	0.86[ASN][1000 genomes]
rs575050	0.85[ASN][1000 genomes]
rs592460	0.86[ASN][1000 genomes]
rs61342895	0.84[ASN][1000 genomes]
rs7107788	0.89[ASN][1000 genomes]
rs7116195	0.86[ASN][1000 genomes]
rs7925739	0.82[ASN][1000 genomes]
rs881120	0.86[ASN][1000 genomes]
rs956202	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85385600-85389800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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