Variant report

Variant	rs956202
Chromosome Location	chr11:85335929-85335930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85335097..85341629-chr11:85372332..85377145,15	MCF-7	breast:
2	chr11:85332546..85334884-chr11:85335363..85336942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1046216	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11600919	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11603256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11606688	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11821005	0.85[ASN][1000 genomes]
rs1237203	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1354397	0.81[CHB][hapmap]
rs17148254	0.83[AFR][1000 genomes]
rs2117312	0.88[ASN][1000 genomes]
rs2196168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2290823	0.82[YRI][hapmap]
rs2840343	0.87[EUR][1000 genomes]
rs290173	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs290174	0.81[ASN][1000 genomes]
rs290179	0.82[CHB][hapmap]
rs290180	0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs290181	0.88[ASN][1000 genomes]
rs290183	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs290184	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs290185	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs290190	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs290195	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs290200	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs290202	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs370385	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs3753050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3781815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3817087	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3824956	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3862782	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4301809	0.83[ASN][1000 genomes]
rs431606	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs491867	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4944526	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4944530	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs496187	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs522604	0.91[ASN][1000 genomes]
rs540063	0.91[JPT][hapmap]
rs550404	0.95[JPT][hapmap]
rs552013	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs556669	0.95[JPT][hapmap]
rs57296431	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs575013	0.81[JPT][hapmap]
rs575050	0.82[CHB][hapmap]
rs57549298	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs580459	0.95[JPT][hapmap]
rs589327	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs592460	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs597480	0.95[JPT][hapmap]
rs61114547	0.87[ASN][1000 genomes]
rs61567739	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs631375	0.82[AFR][1000 genomes]
rs631410	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs641393	0.95[JPT][hapmap]
rs647912	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs679204	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs680498	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7107788	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113528	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7116195	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7119617	0.82[YRI][hapmap]
rs7122887	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7925739	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7940714	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7943586	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs7948778	0.81[YRI][hapmap]
rs881120	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv2617997	chr11:85335284-85336759	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85317800-85337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:85320000-85337600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:85320000-85337600	Weak transcription	Psoas Muscle	Psoas
4	chr11:85321800-85336600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:85323400-85337600	Weak transcription	Left Ventricle	heart
6	chr11:85323800-85337600	Weak transcription	Liver	Liver
7	chr11:85324800-85338000	Weak transcription	Fetal Brain Male	brain
8	chr11:85331200-85338200	Weak transcription	Lung	lung
9	chr11:85332200-85337600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:85332600-85336200	Weak transcription	Fetal Lung	lung
11	chr11:85334000-85336400	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:85335200-85336800	Enhancers	Fetal Heart	heart
13	chr11:85335400-85336200	Weak transcription	Ovary	ovary
14	chr11:85335400-85336400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links