Variant report

Variant	rs290184
Chromosome Location	chr11:85381837-85381838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85374089..85376912-chr11:85380308..85384326,3	K562	blood:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1046216	0.94[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11600919	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11603256	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11606688	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11821005	0.86[ASN][1000 genomes]
rs1237203	0.89[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1354397	0.81[CHB][hapmap]
rs17148293	0.89[AFR][1000 genomes]
rs2117312	0.88[ASN][1000 genomes]
rs2196168	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2290823	0.94[ASW][hapmap];0.88[LWK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs290173	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs290174	0.81[ASN][1000 genomes]
rs290179	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs290180	0.86[CHB][hapmap];0.90[CHD][hapmap];0.88[ASN][1000 genomes]
rs290181	0.90[ASN][1000 genomes]
rs290183	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs290185	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs290190	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs290195	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs290200	0.86[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs290202	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs35844123	0.85[AFR][1000 genomes]
rs370385	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3753050	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781815	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3817087	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824956	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862782	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4301809	0.83[ASN][1000 genomes]
rs431606	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs491867	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4944526	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944530	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs496187	0.81[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs522604	0.91[ASN][1000 genomes]
rs540063	0.85[CHD][hapmap];0.86[JPT][hapmap]
rs550404	0.90[JPT][hapmap]
rs552013	0.94[ASN][1000 genomes]
rs556669	0.90[JPT][hapmap]
rs57296431	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs575050	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs57549298	0.88[ASN][1000 genomes]
rs580459	0.90[JPT][hapmap]
rs589327	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs592460	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs597480	0.90[JPT][hapmap]
rs61114547	0.86[ASN][1000 genomes]
rs61567739	0.80[ASN][1000 genomes]
rs631410	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs641393	0.90[JPT][hapmap]
rs647912	0.81[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs679204	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs680498	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7107788	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7113528	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7116195	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119617	0.94[ASW][hapmap];0.90[LWK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs7122887	0.84[ASN][1000 genomes]
rs7925739	0.90[ASN][1000 genomes]
rs7940714	0.81[ASN][1000 genomes]
rs7943586	0.94[ASW][hapmap];0.84[LWK][hapmap];0.93[YRI][hapmap]
rs7948778	0.86[YRI][hapmap]
rs881120	0.83[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.84[LWK][hapmap];0.96[YRI][hapmap];0.94[ASN][1000 genomes]
rs956202	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85376200-85384000	Weak transcription	Small Intestine	intestine
2	chr11:85377000-85382200	Weak transcription	Fetal Intestine Large	intestine
3	chr11:85377000-85383800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:85377200-85382000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:85378000-85382000	Weak transcription	HepG2	liver
6	chr11:85381800-85382600	Enhancers	Liver	Liver

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