Variant report

Variant	rs290183
Chromosome Location	chr11:85383662-85383663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85374089..85376912-chr11:85380308..85384326,3	K562	blood:
2	chr11:85383482..85385158-chr11:85387525..85389056,2	MCF-7	breast:
3	chr11:85382710..85384303-chr11:85384808..85387343,2	K562	blood:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1046216	0.86[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11600919	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603256	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11606688	0.86[ASN][1000 genomes]
rs11821005	0.84[ASN][1000 genomes]
rs1237203	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17148293	0.86[AFR][1000 genomes]
rs2117312	0.88[ASN][1000 genomes]
rs2196168	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290823	0.82[AFR][1000 genomes]
rs290173	0.87[CHB][hapmap]
rs290179	0.87[CHB][hapmap]
rs290180	0.87[CHB][hapmap];0.89[ASN][1000 genomes]
rs290181	0.88[ASN][1000 genomes]
rs290184	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs290185	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs290190	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs290193	0.81[CHB][hapmap]
rs290195	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs290200	0.87[CHB][hapmap]
rs290202	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs35844123	0.82[AFR][1000 genomes]
rs370385	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs3753050	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781815	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3817087	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824956	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3862782	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4301809	0.81[ASN][1000 genomes]
rs431606	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs491867	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs4944526	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4944530	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs496187	0.85[JPT][hapmap]
rs522604	0.89[ASN][1000 genomes]
rs550404	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs552013	0.92[ASN][1000 genomes]
rs556669	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs57296431	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs575050	0.87[CHB][hapmap]
rs57549298	0.86[ASN][1000 genomes]
rs580459	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs589327	0.80[JPT][hapmap]
rs592460	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs597480	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs61114547	0.84[ASN][1000 genomes]
rs631410	0.86[JPT][hapmap]
rs641393	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs647912	0.85[JPT][hapmap]
rs679204	0.84[JPT][hapmap]
rs680498	0.85[JPT][hapmap]
rs7107788	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113528	0.83[ASN][1000 genomes]
rs7116195	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7119617	0.87[AFR][1000 genomes]
rs7122887	0.82[ASN][1000 genomes]
rs7925739	0.88[ASN][1000 genomes]
rs7948778	0.84[YRI][hapmap]
rs881120	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs956202	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85376200-85384000	Weak transcription	Small Intestine	intestine
2	chr11:85377000-85383800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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