Variant report
| Variant | rs40216 |
|---|---|
| Chromosome Location | chr5:58836950-58836951 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:58822200-58838800 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 2 | chr5:58822800-58837600 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 3 | chr5:58823000-58838200 | Weak transcription | Fetal Brain Male | brain |
| 4 | chr5:58825000-58838600 | Weak transcription | HSMMtube | muscle |
| 5 | chr5:58828800-58838800 | Weak transcription | Gastric | stomach |
| 6 | chr5:58830400-58839000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 7 | chr5:58834600-58838800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 8 | chr5:58834600-58840600 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 9 | chr5:58834600-58840800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 10 | chr5:58835000-58837400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 11 | chr5:58835400-58840600 | Enhancers | Brain Germinal Matrix | brain |
| 12 | chr5:58835600-58840600 | Enhancers | Brain Dorsolateral Prefrontal Cortex | brain |
| 13 | chr5:58835800-58837000 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 14 | chr5:58835800-58837000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 15 | chr5:58835800-58837000 | Enhancers | Brain Inferior Temporal Lobe | brain |
| 16 | chr5:58835800-58837200 | Enhancers | Fetal Lung | lung |
| 17 | chr5:58835800-58839200 | Enhancers | Skeletal Muscle Male | skeletal muscle |
| 18 | chr5:58835800-58840200 | Enhancers | Brain Cingulate Gyrus | brain |
| 19 | chr5:58835800-58840200 | Enhancers | Brain Hippocampus Middle | brain |
| 20 | chr5:58835800-58840400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 21 | chr5:58835800-58840400 | Enhancers | Brain Angular Gyrus | brain |
| 22 | chr5:58835800-58840400 | Enhancers | Brain Anterior Caudate | brain |
| 23 | chr5:58835800-58840400 | Enhancers | Brain Substantia Nigra | brain |
| 24 | chr5:58836000-58837600 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
| 25 | chr5:58836000-58840400 | Enhancers | Duodenum Mucosa | Duodenum |
| 26 | chr5:58836200-58837000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
| 27 | chr5:58836200-58837200 | Weak transcription | Stomach Mucosa | stomach |
| 28 | chr5:58836200-58837400 | Weak transcription | Fetal Kidney | kidney |
| 29 | chr5:58836400-58837000 | Enhancers | Colon Smooth Muscle | Colon |
| 30 | chr5:58836400-58837600 | Weak transcription | Psoas Muscle | Psoas |
| 31 | chr5:58836400-58837600 | Weak transcription | Small Intestine | intestine |
| 32 | chr5:58836400-58837800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 33 | chr5:58836600-58837200 | Enhancers | A549 | lung |
| 34 | chr5:58836600-58837600 | Weak transcription | Fetal Intestine Large | intestine |
| 35 | chr5:58836600-58837600 | Weak transcription | Fetal Muscle Leg | muscle |
| 36 | chr5:58836600-58854400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 37 | chr5:58836800-58837000 | Enhancers | Fetal Stomach | stomach |
| 38 | chr5:58836800-58837200 | Weak transcription | Rectal Smooth Muscle | rectum |
| 39 | chr5:58836800-58837800 | Enhancers | Rectal Mucosa Donor 29 | rectum |
| 40 | chr5:58836800-58837800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 41 | chr5:58836800-58839200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 42 | chr5:58836800-58839600 | Weak transcription | Fetal Brain Female | brain |
| 43 | chr5:58836800-58857400 | Weak transcription | Primary B cells from cord blood | blood |
