The 2.0 version of rSNPBase

Variant report

Variant rs4052895
Chromosome Location chr20:16254598-16254599
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16242400-16275000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr20:16247600-16290800 Weak transcription Primary T helper naive cells fromperipheralblood blood
3 chr20:16248200-16255400 Weak transcription Placenta Placenta
4 chr20:16248400-16259400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr20:16248400-16260800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr20:16248400-16261000 Weak transcription Left Ventricle heart
7 chr20:16248400-16263200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr20:16248400-16263800 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr20:16248600-16291400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr20:16248800-16256600 Weak transcription Primary B cells from peripheral blood blood
11 chr20:16248800-16267000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr20:16248800-16272600 Weak transcription Primary T cells from cord blood blood
13 chr20:16249000-16272800 Weak transcription Right Ventricle heart
14 chr20:16249200-16277400 Weak transcription Brain Substantia Nigra brain
15 chr20:16249400-16264000 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr20:16250000-16266800 Weak transcription Brain Inferior Temporal Lobe brain
17 chr20:16250400-16255600 Enhancers Fetal Brain Male brain
18 chr20:16250600-16260600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr20:16250800-16263400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr20:16251000-16265000 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr20:16251400-16254600 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr20:16251400-16263000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr20:16251400-16263800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr20:16251600-16258200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr20:16251800-16255000 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr20:16251800-16255400 Enhancers Fetal Intestine Large intestine
27 chr20:16251800-16256800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr20:16252000-16270800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr20:16252000-16289400 Weak transcription Rectal Smooth Muscle rectum
30 chr20:16252400-16264400 Weak transcription Small Intestine intestine
31 chr20:16252400-16283000 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr20:16252600-16255000 Weak transcription Brain Cingulate Gyrus brain
33 chr20:16252800-16264800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr20:16253000-16260800 Weak transcription Psoas Muscle Psoas
35 chr20:16253000-16277800 Weak transcription Brain Angular Gyrus brain
36 chr20:16253400-16255400 Enhancers Fetal Adrenal Gland Adrenal Gland
37 chr20:16253400-16255600 Enhancers Ovary ovary
38 chr20:16253400-16256800 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr20:16253600-16254600 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr20:16253600-16254600 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr20:16253600-16254600 Strong transcription Stomach Smooth Muscle stomach
42 chr20:16253600-16268200 Weak transcription Primary T cells fromperipheralblood blood
43 chr20:16253800-16257200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr20:16254000-16255200 Weak transcription Spleen Spleen
45 chr20:16254000-16255400 Weak transcription Primary hematopoietic stem cells blood
46 chr20:16254000-16255400 Enhancers Fetal Brain Female brain
47 chr20:16254000-16255800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr20:16254000-16256400 Weak transcription Lung lung
49 chr20:16254000-16259600 Weak transcription HepG2 liver
50 chr20:16254000-16263200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015