Variant report

Variant	rs6110998
Chromosome Location	chr20:16244236-16244237
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:16241933..16245769-chr20:16247318..16250085,3	MCF-7	breast:
2	chr20:16243563..16246157-chr20:16249684..16251577,2	K562	blood:
3	chr20:16243563..16246157-chr20:16249683..16251577,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485549	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10485550	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11907241	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11908227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11908242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16997595	1.00[JPT][hapmap]
rs17730901	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17731020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3848791	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4052895	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41276366	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4287828	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4416282	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4814466	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814467	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6105560	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6105564	0.82[CHB][hapmap]
rs6110999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6111001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6111004	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6111005	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6111007	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6111008	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6111012	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6111025	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs718610	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs878582	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv519621	chr20:16236837-16248453	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv516591	chr20:16238023-16248453	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16240600-16246200	Weak transcription	Gastric	stomach
2	chr20:16242000-16244800	Enhancers	Ovary	ovary
3	chr20:16242400-16244400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr20:16242400-16275000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:16242800-16245400	Enhancers	Fetal Muscle Leg	muscle
6	chr20:16242800-16245600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:16243200-16244400	Enhancers	Fetal Stomach	stomach
8	chr20:16243400-16244400	Enhancers	Fetal Intestine Small	intestine
9	chr20:16243400-16244800	Enhancers	Spleen	Spleen
10	chr20:16243600-16244600	Enhancers	Left Ventricle	heart
11	chr20:16243800-16244800	Enhancers	Fetal Brain Female	brain
12	chr20:16244000-16244800	Enhancers	Fetal Muscle Trunk	muscle
13	chr20:16244000-16244800	Enhancers	Lung	lung
14	chr20:16244000-16245000	Enhancers	Fetal Brain Male	brain

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