Variant report

Variant	rs4061
Chromosome Location	chr7:102585272-102585273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102583146..102586073-chr7:102591265..102594000,2	K562	blood:
2	chr7:102583269..102586173-chr7:102586196..102588152,2	K562	blood:
3	chr7:102583035..102585728-chr7:102590103..102592728,2	K562	blood:
4	chr7:102583093..102586318-chr7:102605440..102608597,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1061844	1.00[CHB][hapmap]
rs12113318	1.00[CHB][hapmap]
rs6465887	1.00[CHB][hapmap]
rs6465889	1.00[CHB][hapmap]
rs6965463	1.00[CHB][hapmap]
rs7777217	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102573800-102591400	Weak transcription	Pancreas	Pancrea
2	chr7:102574000-102592200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:102574600-102594400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102575000-102586000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:102575000-102586800	Weak transcription	NHLF	lung
6	chr7:102575400-102587000	Strong transcription	NH-A	brain
7	chr7:102575600-102586800	Weak transcription	Osteobl	bone
8	chr7:102577600-102587400	Weak transcription	Fetal Kidney	kidney
9	chr7:102577800-102586400	Weak transcription	Fetal Brain Male	brain
10	chr7:102579000-102585800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:102579600-102587200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:102579600-102588600	Strong transcription	HSMM	muscle
13	chr7:102579800-102586800	Weak transcription	Left Ventricle	heart
14	chr7:102580200-102587400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:102580400-102588200	Weak transcription	HUVEC	blood vessel
16	chr7:102580800-102585600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:102581800-102586000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:102582000-102586000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:102582600-102587400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:102582800-102585800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:102582800-102590800	Weak transcription	Fetal Stomach	stomach
22	chr7:102583600-102587200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:102583800-102585400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:102583800-102586800	Weak transcription	Right Atrium	heart
25	chr7:102583800-102587000	Strong transcription	Fetal Lung	lung
26	chr7:102584000-102585800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:102584000-102585800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:102584200-102585400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:102584400-102585800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr7:102584400-102586000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr7:102584400-102586000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr7:102584400-102586200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr7:102584400-102586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:102584400-102586800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:102584600-102586000	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr7:102584800-102585600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:102584800-102585600	Strong transcription	Ovary	ovary
38	chr7:102584800-102586200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr7:102584800-102586200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr7:102584800-102586200	Strong transcription	HSMMtube	muscle
41	chr7:102585000-102585600	Weak transcription	K562	blood
42	chr7:102585000-102585800	Enhancers	H9 Cell Line	embryonic stem cell
43	chr7:102585000-102588000	Weak transcription	Fetal Muscle Leg	muscle

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