Variant report

Variant	rs6465887
Chromosome Location	chr7:102625855-102625856
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1061844	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12113318	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12154379	1.00[ASN][1000 genomes]
rs17135913	0.84[CEU][hapmap]
rs17135916	0.86[CEU][hapmap]
rs2228687	0.86[CEU][hapmap]
rs2411061	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs4061	1.00[CHB][hapmap]
rs55817310	1.00[ASN][1000 genomes]
rs56165482	1.00[ASN][1000 genomes]
rs61110292	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465886	0.84[CEU][hapmap]
rs6465889	1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs67993916	1.00[ASN][1000 genomes]
rs6958836	1.00[ASN][1000 genomes]
rs6964296	0.84[CEU][hapmap]
rs6965463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968036	0.86[CEU][hapmap]
rs73410104	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410128	1.00[ASN][1000 genomes]
rs7777217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799057	1.00[ASN][1000 genomes]
rs7806025	1.00[ASN][1000 genomes]
rs7806616	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv5881	chr7:102610488-102655699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102613200-102631200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:102618400-102630000	Weak transcription	Right Atrium	heart
3	chr7:102623800-102636600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:102625000-102626800	Strong transcription	K562	blood
5	chr7:102625200-102626400	Enhancers	NH-A	brain
6	chr7:102625400-102626000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:102625400-102626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:102625400-102626400	Enhancers	NHDF-Ad	bronchial
9	chr7:102625400-102626400	Enhancers	NHEK	skin
10	chr7:102625400-102626600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:102625400-102626600	Enhancers	HMEC	breast
12	chr7:102625400-102626600	Enhancers	Osteobl	bone
13	chr7:102625400-102627000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:102625400-102627000	Enhancers	Ovary	ovary
15	chr7:102625600-102626000	Enhancers	HUVEC	blood vessel
16	chr7:102625600-102626200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:102625600-102626200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:102625600-102626400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr7:102625600-102626400	Enhancers	Hela-S3	cervix
20	chr7:102625600-102626600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr7:102625600-102627000	Enhancers	Aorta	Aorta
22	chr7:102625800-102626400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:102625800-102626400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:102625800-102629800	Weak transcription	Gastric	stomach
25	chr7:102625800-102632600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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