Variant report

Variant	rs61110292
Chromosome Location	chr7:102627805-102627806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102573565..102575111-chr7:102627251..102629778,2	K562	blood:

Variant related genes	Relation type
ENSG00000128606	Chromatin interaction
ENSG00000161040	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1061844	1.00[ASN][1000 genomes]
rs12113318	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12154379	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55817310	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56165482	1.00[ASN][1000 genomes]
rs6465887	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465889	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67993916	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6958836	1.00[ASN][1000 genomes]
rs6965463	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410128	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7777217	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799057	1.00[ASN][1000 genomes]
rs7806025	1.00[ASN][1000 genomes]
rs7806616	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv5881	chr7:102610488-102655699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102613200-102631200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:102618400-102630000	Weak transcription	Right Atrium	heart
3	chr7:102623800-102636600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:102625800-102629800	Weak transcription	Gastric	stomach
5	chr7:102625800-102632600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:102626000-102629400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:102626000-102630400	Weak transcription	HUVEC	blood vessel
8	chr7:102626200-102630600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:102626200-102631200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:102626400-102628400	Weak transcription	Hela-S3	cervix
11	chr7:102626400-102629800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:102626400-102631000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:102626400-102631000	Weak transcription	NHDF-Ad	bronchial
14	chr7:102626400-102631000	Weak transcription	NHEK	skin
15	chr7:102626400-102631200	Weak transcription	NH-A	brain
16	chr7:102626400-102631600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:102626600-102629400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:102626600-102630400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:102626600-102630400	Weak transcription	Osteobl	bone
20	chr7:102626600-102630600	Weak transcription	HMEC	breast
21	chr7:102627000-102628200	Weak transcription	Ovary	ovary
22	chr7:102627000-102629400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:102627000-102629400	Weak transcription	Aorta	Aorta
24	chr7:102627800-102631800	Genic enhancers	K562	blood

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