Variant report

Variant	rs406398
Chromosome Location	chr21:41507102-41507103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2837448	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs387213	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs392167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs397565	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs408999	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs430433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs431425	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs444436	0.92[ASN][1000 genomes]
rs445051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs445822	0.81[EUR][1000 genomes]
rs448324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs449023	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs451658	0.87[ASN][1000 genomes]
rs7281745	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9975693	0.98[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41491800-41510200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr21:41492400-41510400	Weak transcription	Fetal Brain Female	brain
3	chr21:41493000-41510200	Weak transcription	Brain Angular Gyrus	brain
4	chr21:41494200-41511600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr21:41498400-41510200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr21:41499000-41517200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr21:41500400-41510600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr21:41500600-41516200	Weak transcription	Fetal Brain Male	brain
9	chr21:41500800-41516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr21:41503000-41513200	Weak transcription	HMEC	breast
11	chr21:41503000-41518400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr21:41505000-41526400	Weak transcription	Fetal Muscle Leg	muscle
13	chr21:41506200-41510200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr21:41506400-41511800	Weak transcription	Brain Anterior Caudate	brain
15	chr21:41506800-41507600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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