Variant report

Variant	rs406744
Chromosome Location	chr11:41836126-41836127
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10219392	0.82[ASN][1000 genomes]
rs10768743	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10768745	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10768746	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10768747	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10768748	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10768749	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10768751	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10768752	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10768753	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10768754	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10768755	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10768756	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10768757	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10837728	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837730	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10837731	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10837732	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837733	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837734	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837735	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837736	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10837737	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837738	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837739	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837740	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10837748	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11036563	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11036566	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11036567	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1385379	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1484955	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1484957	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531174	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531175	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531176	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531177	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531931	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531932	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531933	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531934	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2124664	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2124665	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2168534	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2168535	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2862305	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2862383	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2902239	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs429843	0.92[ASN][1000 genomes]
rs4755586	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4756671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5024633	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs530384	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs532994	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs533243	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs534828	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs535733	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533987	chr11:41430733-42248152	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1035877	chr11:41818154-41838190	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1830006	chr11:41818266-41842341	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv972921	chr11:41818848-41850913	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897291	chr11:41818859-41902777	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv897292	chr11:41818859-41906525	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv897293	chr11:41818859-41914936	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv983167	chr11:41828857-41846335	Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv3349323	chr11:41834276-41837974	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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