Variant report

Variant	rs4068928
Chromosome Location	chr1:166273476-166273477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10918421	0.88[EUR][1000 genomes]
rs12091733	0.85[ASN][1000 genomes]
rs16856811	0.85[ASN][1000 genomes]
rs1891725	0.88[EUR][1000 genomes]
rs3813991	0.85[ASN][1000 genomes]
rs7536144	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7547418	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv3453421	chr1:166273345-166273515	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3453422	chr1:166273359-166273511	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166270200-166277200	Weak transcription	Psoas Muscle	Psoas
2	chr1:166272600-166273600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166272800-166273800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:166272800-166273800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:166272800-166276200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:166272800-166276400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:166272800-166276600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:166273400-166273600	Enhancers	Fetal Heart	heart
9	chr1:166273400-166273800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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