Variant report

Variant	rs1891725
Chromosome Location	chr1:166274718-166274719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10753723	0.82[EUR][1000 genomes]
rs10753724	0.82[EUR][1000 genomes]
rs10800209	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10918421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545007	0.86[JPT][hapmap]
rs2311320	0.80[AMR][1000 genomes]
rs4068928	0.88[EUR][1000 genomes]
rs4233412	0.82[EUR][1000 genomes]
rs4575063	0.80[AMR][1000 genomes]
rs4617382	0.80[AMR][1000 genomes]
rs4657538	0.80[AMR][1000 genomes]
rs4657541	0.80[EUR][1000 genomes]
rs7525163	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7536144	0.91[EUR][1000 genomes]
rs7547418	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166270200-166277200	Weak transcription	Psoas Muscle	Psoas
2	chr1:166272800-166276200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:166272800-166276400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:166272800-166276600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:166273600-166276400	Weak transcription	Fetal Heart	heart
6	chr1:166273800-166275400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:166274400-166277600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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