Variant report

Variant	rs4072059
Chromosome Location	chr18:45564962-45564963
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45563814..45565161-chr18:45704955..45705964,6	MCF-7	breast:
2	chr18:45563994..45565756-chr18:45579042..45580612,2	MCF-7	breast:
3	chr18:45564098..45565131-chr18:45631343..45632339,4	MCF-7	breast:
4	chr18:45563962..45566776-chr18:45685192..45687168,2	MCF-7	breast:
5	chr18:45564106..45564965-chr18:45703691..45704462,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4074018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7234787	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs72918159	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45552600-45565200	Weak transcription	Colonic Mucosa	Colon
2	chr18:45554200-45567800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr18:45554400-45567600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr18:45557400-45570000	Weak transcription	Fetal Intestine Small	intestine
5	chr18:45558400-45578400	Weak transcription	Ovary	ovary
6	chr18:45559000-45565600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr18:45559800-45565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr18:45560200-45566400	Genic enhancers	Esophagus	oesophagus
9	chr18:45562400-45565200	Enhancers	Lung	lung
10	chr18:45562600-45566800	Weak transcription	Aorta	Aorta
11	chr18:45562800-45565000	Enhancers	Fetal Kidney	kidney
12	chr18:45562800-45565200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr18:45563800-45565800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:45564200-45565800	Weak transcription	Hela-S3	cervix
15	chr18:45564200-45566800	Weak transcription	Dnd41	blood
16	chr18:45564200-45568000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr18:45564400-45565600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr18:45564400-45567400	Strong transcription	Gastric	stomach
19	chr18:45564400-45568800	Weak transcription	Right Atrium	heart
20	chr18:45564400-45576000	Weak transcription	Stomach Mucosa	stomach
21	chr18:45564600-45565400	Enhancers	Spleen	Spleen
22	chr18:45564600-45566800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr18:45564600-45567000	Weak transcription	Pancreas	Pancrea
24	chr18:45564600-45569200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr18:45564800-45565800	Weak transcription	Fetal Muscle Leg	muscle
26	chr18:45564800-45567200	Strong transcription	Fetal Stomach	stomach
27	chr18:45564800-45572000	Weak transcription	Placenta	Placenta

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