Variant report

Variant	rs72918159
Chromosome Location	chr18:45567590-45567591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4072059	0.91[ASN][1000 genomes]
rs4074018	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7234787	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7234957	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45554200-45567800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr18:45554400-45567600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:45557400-45570000	Weak transcription	Fetal Intestine Small	intestine
4	chr18:45558400-45578400	Weak transcription	Ovary	ovary
5	chr18:45564200-45568000	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr18:45564400-45568800	Weak transcription	Right Atrium	heart
7	chr18:45564400-45576000	Weak transcription	Stomach Mucosa	stomach
8	chr18:45564600-45569200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr18:45564800-45572000	Weak transcription	Placenta	Placenta
10	chr18:45565800-45567600	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:45566400-45567800	Strong transcription	Esophagus	oesophagus
12	chr18:45566600-45576200	Weak transcription	Hela-S3	cervix
13	chr18:45566800-45567600	Strong transcription	Aorta	Aorta
14	chr18:45566800-45567800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr18:45567200-45569400	Weak transcription	Fetal Muscle Leg	muscle
16	chr18:45567200-45572200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr18:45567200-45576800	Weak transcription	Colonic Mucosa	Colon
18	chr18:45567400-45567600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr18:45567400-45567600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr18:45567400-45567600	Strong transcription	Spleen	Spleen
21	chr18:45567400-45568800	Weak transcription	Lung	lung
22	chr18:45567400-45569400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr18:45567400-45571800	Weak transcription	Gastric	stomach
24	chr18:45567400-45576200	Weak transcription	Rectal Mucosa Donor 29	rectum

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