Variant report

Variant	rs4072158
Chromosome Location	chr15:93316139-93316140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93314719..93317520-chr15:93318260..93321146,2	MCF-7	breast:
2	chr15:93314575..93317372-chr15:93351909..93353972,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11074104	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12910258	0.86[AMR][1000 genomes]
rs28476168	0.87[AMR][1000 genomes]
rs28493166	0.85[AMR][1000 genomes]
rs28569165	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28645459	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4072159	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4991375	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6496991	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67463648	0.82[AMR][1000 genomes]
rs7167019	0.86[AMR][1000 genomes]
rs7167390	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7167395	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7167779	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7168245	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7168253	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7169034	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7171052	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7171375	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7172746	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7173021	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7173418	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7173890	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7174203	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7174856	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7174939	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7177154	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7178715	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7183797	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7494848	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8031203	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8032507	0.88[AMR][1000 genomes]
rs8038332	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9302359	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9744428	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1042292	chr15:93286333-93374887	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv94522	chr15:93306419-93316316	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93295800-93323200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:93304800-93344800	Weak transcription	Aorta	Aorta
3	chr15:93311400-93322800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:93313000-93330400	Weak transcription	Lung	lung
5	chr15:93315000-93317200	Enhancers	HepG2	liver
6	chr15:93315000-93325200	Weak transcription	Right Ventricle	heart
7	chr15:93315400-93316600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:93315400-93340200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:93315400-93340400	Weak transcription	Pancreas	Pancrea
10	chr15:93315400-93340600	Weak transcription	Ovary	ovary
11	chr15:93316000-93317200	Enhancers	Spleen	Spleen

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