Variant report

Variant	rs4073518
Chromosome Location	chr5:106365546-106365547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106354055..106355877-chr5:106363964..106366429,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10464034	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11242616	0.96[CEU][hapmap]
rs11242617	0.88[EUR][1000 genomes]
rs11242618	0.88[EUR][1000 genomes]
rs12521220	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12521304	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12522964	0.84[EUR][1000 genomes]
rs12656884	0.96[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12658333	0.91[CEU][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13156523	1.00[CEU][hapmap]
rs13169142	0.86[ASN][1000 genomes]
rs13177006	0.95[CEU][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34251658	0.89[EUR][1000 genomes]
rs4073517	0.80[AFR][1000 genomes]
rs4264928	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4298243	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4357022	0.84[EUR][1000 genomes]
rs4464676	0.96[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377274	0.87[EUR][1000 genomes]
rs6864852	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6875367	0.98[ASN][1000 genomes]
rs6886133	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7444810	0.94[ASN][1000 genomes]
rs7712577	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv969242	chr5:106364690-106370107	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106362800-106367600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:106365200-106366400	Enhancers	Fetal Heart	heart

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