Variant report

Variant	rs6875367
Chromosome Location	chr5:106361953-106361954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10464034	0.94[ASN][1000 genomes]
rs11242616	0.89[JPT][hapmap]
rs12521220	0.89[ASN][1000 genomes]
rs12521304	0.97[ASN][1000 genomes]
rs12656884	0.82[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs12658333	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs13156523	0.89[JPT][hapmap]
rs13169142	0.88[ASN][1000 genomes]
rs13177006	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs4073518	0.98[ASN][1000 genomes]
rs4264928	0.86[ASN][1000 genomes]
rs4298243	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4464676	0.89[JPT][hapmap]
rs6862175	0.80[AFR][1000 genomes]
rs6864852	1.00[ASN][1000 genomes]
rs6866693	0.81[AFR][1000 genomes]
rs6876240	0.80[AFR][1000 genomes]
rs6885273	0.81[AFR][1000 genomes]
rs6886133	0.90[ASN][1000 genomes]
rs7444810	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7712577	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106360800-106362600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:106361000-106363400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:106361200-106362000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:106361200-106362400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr5:106361200-106362600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:106361200-106362600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:106361400-106362600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:106361400-106362600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:106361600-106362000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr5:106361600-106362200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:106361800-106362200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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