Variant report

Variant	rs4073708
Chromosome Location	chr5:119301649-119301650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12513439	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513497	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs171252	0.82[ASN][1000 genomes]
rs4360068	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4895215	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873107	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889188	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7718194	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7718340	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs902503	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs931452	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs931453	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs978445	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv882778	chr5:118972113-119384039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv599568	chr5:119199265-119414589	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1833699	chr5:119233362-119304651	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119301200-119302400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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