Variant report

Variant	rs407458
Chromosome Location	chr6:14898109-14898110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs394043	0.97[AFR][1000 genomes]
rs443676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14894400-14912400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14896400-14899200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:14897000-14898800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:14897200-14898200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:14897600-14898800	Enhancers	Fetal Thymus	thymus
7	chr6:14897800-14898200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:14897800-14898200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:14897800-14898400	Enhancers	Primary T cells from cord blood	blood
10	chr6:14897800-14898600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:14897800-14898600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:14897800-14898800	Enhancers	Primary B cells from cord blood	blood
13	chr6:14897800-14898800	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:14898000-14898600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr6:14898000-14898600	Enhancers	GM12878-XiMat	blood
16	chr6:14898000-14900000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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