Variant report

Variant	rs4075786
Chromosome Location	chr11:120697162-120697163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12291852	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1320649	0.80[EUR][1000 genomes]
rs1939671	1.00[ASN][1000 genomes]
rs1939672	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs3020100	1.00[ASN][1000 genomes]
rs3020104	1.00[ASN][1000 genomes]
rs3020105	0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs3020184	1.00[ASN][1000 genomes]
rs4076169	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114795	0.87[ASW][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs73003743	1.00[ASN][1000 genomes]
rs73003745	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003764	1.00[ASN][1000 genomes]
rs73003773	1.00[ASN][1000 genomes]
rs948024	1.00[ASN][1000 genomes]
rs948025	1.00[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs948026	0.86[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948034	1.00[CHD][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120684000-120707600	Weak transcription	Ovary	ovary
2	chr11:120688200-120699800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:120688600-120698400	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:120690800-120698600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:120691400-120699000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:120691600-120698800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:120694600-120703000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:120696000-120697600	Strong transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links