Variant report

Variant	rs73003764
Chromosome Location	chr11:120711290-120711291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1939671	1.00[ASN][1000 genomes]
rs1939672	1.00[ASN][1000 genomes]
rs3020100	1.00[ASN][1000 genomes]
rs3020104	1.00[ASN][1000 genomes]
rs3020184	1.00[ASN][1000 genomes]
rs4075786	1.00[ASN][1000 genomes]
rs4076169	1.00[ASN][1000 genomes]
rs73003743	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003745	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003773	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948024	1.00[ASN][1000 genomes]
rs948025	1.00[ASN][1000 genomes]
rs948026	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120699400-120729200	Weak transcription	Fetal Lung	lung
2	chr11:120703600-120714600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120704400-120728400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:120704400-120746000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:120704400-120748800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:120708000-120728800	Weak transcription	Ovary	ovary
7	chr11:120710600-120711400	Enhancers	GM12878-XiMat	blood
8	chr11:120710800-120711400	Flanking Active TSS	HepG2	liver
9	chr11:120711000-120711400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:120711000-120711600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:120711200-120711600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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