Variant report

Variant	rs4076878
Chromosome Location	chr9:98834200-98834201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98825741..98828802-chr9:98832378..98835494,4	K562	blood:
2	chr9:98833447..98834399-chr9:98980162..98981097,3	MCF-7	breast:
3	chr9:98827301..98828802-chr9:98832727..98835494,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10989148	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12342954	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4072766	0.82[CEU][hapmap]
rs4072767	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4075991	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4742826	1.00[ASN][1000 genomes]
rs72743928	1.00[ASN][1000 genomes]
rs72743932	1.00[ASN][1000 genomes]
rs72743934	1.00[ASN][1000 genomes]
rs72743943	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98824200-98843000	Weak transcription	Esophagus	oesophagus
2	chr9:98824800-98835200	Weak transcription	Fetal Intestine Large	intestine
3	chr9:98824800-98835600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:98827600-98834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:98829800-98835800	Weak transcription	Aorta	Aorta
6	chr9:98831400-98834400	Weak transcription	Stomach Mucosa	stomach
7	chr9:98833200-98834600	Enhancers	Fetal Stomach	stomach
8	chr9:98833400-98835600	Enhancers	Gastric	stomach
9	chr9:98833400-98838400	Enhancers	Fetal Lung	lung
10	chr9:98833600-98834200	Enhancers	Brain Angular Gyrus	brain
11	chr9:98833600-98836600	Enhancers	Pancreas	Pancrea
12	chr9:98833800-98834200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:98833800-98835800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:98833800-98837600	Enhancers	Fetal Intestine Small	intestine
15	chr9:98833800-98843800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:98834000-98835000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:98834000-98835400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:98834000-98835400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:98834000-98835600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:98834000-98835600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:98834000-98841000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:98834000-98849600	Weak transcription	Brain Substantia Nigra	brain

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