Variant report

Variant	rs72743943
Chromosome Location	chr9:98824680-98824681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98636264..98639064-chr9:98822222..98824808,3	MCF-7	breast:
2	chr9:98636330..98638278-chr9:98823569..98825310,2	K562	blood:
3	chr9:98814315..98817027-chr9:98823230..98826158,2	MCF-7	breast:
4	chr9:98820092..98822535-chr9:98824625..98827405,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182150	Chromatin interaction
ENSG00000175611	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10989096	0.94[EUR][1000 genomes]
rs17306197	0.96[AFR][1000 genomes]
rs4076878	1.00[ASN][1000 genomes]
rs4742826	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742831	0.88[AFR][1000 genomes]
rs4743501	0.85[EUR][1000 genomes]
rs72743928	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743932	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743934	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867155	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98810200-98827200	Weak transcription	Aorta	Aorta
2	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:98812800-98829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:98819800-98832000	Weak transcription	Gastric	stomach
5	chr9:98823000-98824800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr9:98823200-98824800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:98823200-98824800	Enhancers	Duodenum Mucosa	Duodenum
8	chr9:98823200-98825000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:98823200-98825200	Enhancers	Spleen	Spleen
10	chr9:98823200-98825800	Enhancers	Fetal Stomach	stomach
11	chr9:98823200-98827600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:98823400-98824800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:98823400-98824800	Enhancers	Fetal Intestine Small	intestine
14	chr9:98823400-98824800	Enhancers	NHDF-Ad	bronchial
15	chr9:98823400-98825200	Enhancers	Fetal Lung	lung
16	chr9:98823600-98824800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:98823600-98824800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:98823600-98825000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:98823600-98825000	Enhancers	Ovary	ovary
20	chr9:98824000-98824800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:98824000-98824800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:98824000-98824800	Enhancers	Fetal Kidney	kidney
23	chr9:98824200-98824800	Enhancers	Fetal Intestine Large	intestine
24	chr9:98824200-98826800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:98824200-98826800	Weak transcription	Pancreas	Pancrea
26	chr9:98824200-98827000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:98824200-98827200	Weak transcription	Adipose Nuclei	Adipose
28	chr9:98824200-98828400	Weak transcription	Right Atrium	heart
29	chr9:98824200-98829000	Weak transcription	HSMMtube	muscle
30	chr9:98824200-98829400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:98824200-98829400	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:98824200-98829400	Weak transcription	Lung	lung
33	chr9:98824200-98829800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:98824200-98833600	Weak transcription	Brain Anterior Caudate	brain
35	chr9:98824200-98843000	Weak transcription	Esophagus	oesophagus
36	chr9:98824400-98825200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr9:98824400-98829600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:98824400-98830800	Weak transcription	Stomach Mucosa	stomach
39	chr9:98824400-98831400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr9:98824600-98824800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr9:98824600-98826800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:98824600-98826800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr9:98824600-98829000	Weak transcription	Fetal Muscle Leg	muscle

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