Variant report

Variant	rs4742831
Chromosome Location	chr9:98820194-98820195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10989106	0.86[JPT][hapmap]
rs17306197	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35838534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742826	0.84[EUR][1000 genomes]
rs4743501	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743507	0.89[ASN][1000 genomes]
rs55714028	0.84[ASN][1000 genomes]
rs55761906	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55849673	0.89[ASN][1000 genomes]
rs57287260	0.98[ASN][1000 genomes]
rs59478222	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60351339	0.98[ASN][1000 genomes]
rs72743928	0.84[EUR][1000 genomes]
rs72743932	0.84[EUR][1000 genomes]
rs72743934	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72743939	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743943	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv982606	chr9:98814728-98823757	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98810200-98823400	Weak transcription	Right Atrium	heart
2	chr9:98810200-98827200	Weak transcription	Aorta	Aorta
3	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:98812800-98829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:98815200-98824600	Weak transcription	Fetal Brain Male	brain
6	chr9:98815400-98823400	Weak transcription	Fetal Kidney	kidney
7	chr9:98816000-98823800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:98818600-98823400	Weak transcription	Esophagus	oesophagus
9	chr9:98819000-98823200	Weak transcription	Brain Hippocampus Middle	brain
10	chr9:98819000-98823200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:98819000-98823200	Weak transcription	Stomach Mucosa	stomach
12	chr9:98819000-98823400	Weak transcription	Brain Anterior Caudate	brain
13	chr9:98819600-98823200	Weak transcription	Fetal Stomach	stomach
14	chr9:98819800-98823400	Weak transcription	NHDF-Ad	bronchial
15	chr9:98819800-98823800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:98819800-98832000	Weak transcription	Gastric	stomach
17	chr9:98820000-98823200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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