Variant report

Variant	rs408262
Chromosome Location	chr17:37761507-37761508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37759375..37763031-chr17:37763265..37765961,4	K562	blood:
2	chr17:37760982..37763537-chr17:37878611..37880800,2	K562	blood:
3	chr17:37756158..37758402-chr17:37760489..37762828,2	K562	blood:
4	chr17:37759878..37762418-chr17:37771643..37773208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171532	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
3	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
7	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	nsv833442	chr17:37692880-37861291	Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv521294	chr17:37694709-37804858	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv908205	chr17:37709422-37830900	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
14	nsv908208	chr17:37749259-37781849	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv908209	chr17:37749259-37790340	Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv908210	chr17:37761202-37781849	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37756200-37761800	Weak transcription	Right Atrium	heart
2	chr17:37757400-37761600	Weak transcription	Pancreas	Pancrea
3	chr17:37758400-37761600	Weak transcription	Gastric	stomach
4	chr17:37759600-37761600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
5	chr17:37759600-37762400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr17:37759600-37763600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:37759800-37761800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr17:37759800-37763800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
9	chr17:37759800-37764600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr17:37760000-37761600	Bivalent Enhancer	Brain Germinal Matrix	brain
11	chr17:37760000-37762000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
12	chr17:37760000-37762400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
13	chr17:37760000-37764000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:37760000-37764000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:37760000-37764800	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr17:37760200-37761800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr17:37760200-37762400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
18	chr17:37760200-37762400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr17:37760200-37763000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr17:37760200-37764000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
21	chr17:37760200-37764000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:37760200-37765000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
23	chr17:37760400-37762000	Bivalent Enhancer	Fetal Intestine Large	intestine
24	chr17:37760400-37762200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr17:37760400-37762400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr17:37760400-37765000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr17:37760600-37762400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr17:37760600-37762800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr17:37760600-37763000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:37760800-37761600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr17:37761000-37761600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
32	chr17:37761000-37761800	Bivalent Enhancer	Primary B cells from cord blood	blood
33	chr17:37761000-37761800	Bivalent Enhancer	A549	lung
34	chr17:37761000-37763000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
35	chr17:37761000-37763600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr17:37761000-37764600	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr17:37761200-37761600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr17:37761200-37761800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr17:37761200-37761800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
40	chr17:37761200-37761800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr17:37761200-37761800	Bivalent Enhancer	Adipose Nuclei	Adipose
42	chr17:37761200-37761800	Bivalent Enhancer	Colonic Mucosa	Colon
43	chr17:37761200-37761800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
44	chr17:37761200-37762000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr17:37761200-37762000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
46	chr17:37761200-37762000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
47	chr17:37761200-37762000	Bivalent Enhancer	Spleen	Spleen
48	chr17:37761200-37762200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
49	chr17:37761200-37762600	Bivalent Enhancer	Fetal Intestine Small	intestine
50	chr17:37761200-37762600	Bivalent Enhancer	GM12878-XiMat	blood

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