Variant report

Variant	rs4085921
Chromosome Location	chr13:94293676-94293677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508009	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12867662	0.88[CEU][hapmap]
rs1330620	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.84[YRI][hapmap]
rs17267898	0.95[ASN][1000 genomes]
rs1933779	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1933783	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs3848066	0.91[CHB][hapmap];0.89[CHD][hapmap];0.80[JPT][hapmap]
rs3899317	0.91[CHB][hapmap];0.89[CHD][hapmap];0.80[JPT][hapmap]
rs3931532	0.84[AFR][1000 genomes]
rs4394948	0.83[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap]
rs4561306	0.80[JPT][hapmap]
rs4771878	0.91[ASW][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4771880	0.83[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap]
rs4773754	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7318470	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7326436	0.98[ASN][1000 genomes]
rs7332553	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.81[TSI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7489484	0.83[CHB][hapmap];0.84[CHD][hapmap];0.80[JPT][hapmap]
rs7981536	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7995122	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs7995942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8001159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9301898	0.91[CHB][hapmap];0.94[CHD][hapmap];0.80[JPT][hapmap]
rs9301900	0.89[ASN][1000 genomes]
rs9516264	0.88[CEU][hapmap]
rs9516269	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9516273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9524163	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.84[YRI][hapmap]
rs9524172	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9524175	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.87[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9556314	0.81[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs9556316	0.88[ASN][1000 genomes]
rs9561416	0.91[CHB][hapmap];0.89[CHD][hapmap];0.80[JPT][hapmap]
rs9589813	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.87[MKK][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9589816	0.83[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758340	chr13:94174654-94348179	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759958	chr13:94174654-94348179	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832683	chr13:94207802-94370926	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv562751	chr13:94210858-94294144	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1039305	chr13:94229672-94398382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2753914	chr13:94262199-94340399	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1035144	chr13:94283044-94352174	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv562753	chr13:94283764-94402110	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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