Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10172714	0.92[GIH][hapmap];0.93[JPT][hapmap]
rs10201980	0.81[GIH][hapmap]
rs10203995	0.94[TSI][hapmap]
rs1454222	0.87[JPT][hapmap]
rs17577089	0.81[EUR][1000 genomes]
rs1869513	0.85[JPT][hapmap]
rs2599074	0.91[ASN][1000 genomes]
rs2888585	0.86[JPT][hapmap]
rs297159	0.86[JPT][hapmap]
rs297160	0.83[JPT][hapmap]
rs368451	0.82[CEU][hapmap];0.92[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs369749	0.81[EUR][1000 genomes]
rs3765058	0.82[GIH][hapmap]
rs422854	0.93[JPT][hapmap]
rs441869	0.98[ASN][1000 genomes]
rs4670903	0.87[JPT][hapmap]
rs56767805	0.89[ASN][1000 genomes]
rs6544183	0.85[GIH][hapmap]
rs6544185	0.82[GIH][hapmap]
rs6544197	0.83[JPT][hapmap]
rs6704656	0.86[JPT][hapmap]
rs7571052	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873884	chr2:39154463-39332093	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2755359	chr2:39169049-39417849	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs408686	SOS1	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39150000-39186600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:39150400-39184800	Weak transcription	Psoas Muscle	Psoas
4	chr2:39160400-39186600	Weak transcription	Pancreas	Pancrea
5	chr2:39163800-39183600	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:39175000-39186600	Weak transcription	Ovary	ovary
7	chr2:39175000-39187000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:39175200-39179200	Weak transcription	Fetal Lung	lung
9	chr2:39175200-39186800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:39176200-39179600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:39176600-39186600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:39176800-39184200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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