Variant report

Variant	rs409435
Chromosome Location	chr4:127526362-127526363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1009241	0.82[EUR][1000 genomes]
rs3114040	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs313087	0.82[EUR][1000 genomes]
rs313095	0.89[EUR][1000 genomes]
rs313096	0.90[EUR][1000 genomes]
rs313097	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs313098	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs313105	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs313144	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313146	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs403001	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs405317	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs431286	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs446534	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013854	chr4:127508969-127663216	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127519400-127532800	Weak transcription	K562	blood
2	chr4:127525200-127527000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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