Variant report

Variant	rs409770
Chromosome Location	chr10:61087912-61087913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs284633	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831888	chr10:60943655-61138251	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv467289	chr10:61075213-61139869	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv551148	chr10:61075213-61139869	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61083200-61088200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:61083200-61088400	Weak transcription	Osteobl	bone
3	chr10:61083400-61095400	Weak transcription	Adipose Nuclei	Adipose
4	chr10:61083800-61088400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:61084000-61088200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:61084000-61088200	Weak transcription	HSMM	muscle
7	chr10:61084000-61088800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:61084000-61089600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:61084000-61089600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:61084000-61089800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:61084000-61095200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:61084000-61095200	Weak transcription	Fetal Lung	lung
13	chr10:61084000-61096000	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:61084000-61096200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:61084000-61096200	Weak transcription	Fetal Brain Female	brain
16	chr10:61084000-61097400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:61084200-61091000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:61084200-61096800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:61084400-61088000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:61084600-61089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:61084800-61088400	Enhancers	Brain Angular Gyrus	brain
22	chr10:61084800-61088400	Enhancers	Brain Substantia Nigra	brain
23	chr10:61085400-61088200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:61085400-61089200	Weak transcription	HSMMtube	muscle
25	chr10:61085400-61090400	Weak transcription	Psoas Muscle	Psoas
26	chr10:61085600-61090400	Weak transcription	Ovary	ovary
27	chr10:61085600-61094200	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:61085600-61096200	Weak transcription	Fetal Heart	heart
29	chr10:61085600-61096400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:61086200-61092400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:61087600-61088000	Enhancers	Brain Anterior Caudate	brain
32	chr10:61087600-61088600	Genic enhancers	Brain Hippocampus Middle	brain
33	chr10:61087800-61088200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:61087800-61089200	Enhancers	Rectal Smooth Muscle	rectum
35	chr10:61087800-61090400	Weak transcription	Aorta	Aorta

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