Variant report

Variant	rs284633
Chromosome Location	chr10:61090063-61090064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1901179	1.00[JPT][hapmap]
rs284610	1.00[JPT][hapmap]
rs284614	1.00[JPT][hapmap]
rs409770	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410191	1.00[JPT][hapmap]
rs453670	1.00[JPT][hapmap]
rs7097165	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831888	chr10:60943655-61138251	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv467289	chr10:61075213-61139869	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv551148	chr10:61075213-61139869	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs284633	PPARGC1A	trans	lymphoblastoid	seeQTL
rs284633	FAM13C	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61083400-61095400	Weak transcription	Adipose Nuclei	Adipose
2	chr10:61084000-61095200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:61084000-61095200	Weak transcription	Fetal Lung	lung
4	chr10:61084000-61096000	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:61084000-61096200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:61084000-61096200	Weak transcription	Fetal Brain Female	brain
7	chr10:61084000-61097400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:61084200-61091000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:61084200-61096800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:61085400-61090400	Weak transcription	Psoas Muscle	Psoas
11	chr10:61085600-61090400	Weak transcription	Ovary	ovary
12	chr10:61085600-61094200	Enhancers	Brain Cingulate Gyrus	brain
13	chr10:61085600-61096200	Weak transcription	Fetal Heart	heart
14	chr10:61085600-61096400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:61086200-61092400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:61087800-61090400	Weak transcription	Aorta	Aorta
17	chr10:61088200-61090600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:61088800-61093800	Enhancers	Brain Anterior Caudate	brain
19	chr10:61089200-61091600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:61089200-61096000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:61089200-61098400	Enhancers	Brain Hippocampus Middle	brain
22	chr10:61089400-61093000	Enhancers	Brain Angular Gyrus	brain
23	chr10:61089400-61098200	Enhancers	Brain Substantia Nigra	brain
24	chr10:61089600-61090600	Weak transcription	HSMMtube	muscle
25	chr10:61089600-61090800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:61089600-61092800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:61089600-61093400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:61089800-61090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:61089800-61090800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:61089800-61090800	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:61089800-61091000	Weak transcription	HSMM	muscle
32	chr10:61089800-61096000	Weak transcription	Osteobl	bone
33	chr10:61090000-61090200	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr10:61090000-61090800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:61090000-61093800	Enhancers	Brain Inferior Temporal Lobe	brain

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