Variant report

Variant	rs7097165
Chromosome Location	chr10:61085131-61085132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:61085126-61085157	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
FAM13C	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs284633	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831888	chr10:60943655-61138251	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv467289	chr10:61075213-61139869	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv551148	chr10:61075213-61139869	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61080200-61087600	Weak transcription	Brain Germinal Matrix	brain
2	chr10:61081600-61085400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:61083200-61085400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:61083200-61088200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:61083200-61088400	Weak transcription	Osteobl	bone
6	chr10:61083400-61095400	Weak transcription	Adipose Nuclei	Adipose
7	chr10:61083600-61085400	Weak transcription	Fetal Heart	heart
8	chr10:61083800-61087200	Weak transcription	Fetal Brain Male	brain
9	chr10:61083800-61087800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:61083800-61088400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:61084000-61085200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:61084000-61085200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:61084000-61086000	Weak transcription	Fetal Stomach	stomach
14	chr10:61084000-61088200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:61084000-61088200	Weak transcription	HSMM	muscle
16	chr10:61084000-61088800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:61084000-61089600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:61084000-61089600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:61084000-61089800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:61084000-61095200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:61084000-61095200	Weak transcription	Fetal Lung	lung
22	chr10:61084000-61096000	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:61084000-61096200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:61084000-61096200	Weak transcription	Fetal Brain Female	brain
25	chr10:61084000-61097400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:61084200-61087000	Enhancers	Brain Hippocampus Middle	brain
27	chr10:61084200-61091000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:61084200-61096800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:61084400-61088000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr10:61084600-61085400	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:61084600-61085600	Enhancers	Ovary	ovary
32	chr10:61084600-61086400	Weak transcription	Aorta	Aorta
33	chr10:61084600-61089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:61084800-61085200	Weak transcription	HSMMtube	muscle
35	chr10:61084800-61085400	Enhancers	Brain Anterior Caudate	brain
36	chr10:61084800-61085400	Enhancers	Psoas Muscle	Psoas
37	chr10:61084800-61088400	Enhancers	Brain Angular Gyrus	brain
38	chr10:61084800-61088400	Enhancers	Brain Substantia Nigra	brain

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