Variant report

Variant	rs284614
Chromosome Location	chr10:61120684-61120685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1824429	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1901179	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284602	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284633	1.00[JPT][hapmap]
rs397014	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410191	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453670	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831888	chr10:60943655-61138251	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv467289	chr10:61075213-61139869	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv551148	chr10:61075213-61139869	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv551149	chr10:61115114-61190125	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61096400-61122000	Weak transcription	Gastric	stomach
2	chr10:61097400-61121600	Weak transcription	Right Ventricle	heart
3	chr10:61109000-61122200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:61109600-61121600	Weak transcription	Colonic Mucosa	Colon
5	chr10:61110200-61121600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:61114800-61121600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:61118000-61120800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:61118600-61120800	Enhancers	Fetal Heart	heart
9	chr10:61119600-61123600	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr10:61120000-61120800	Flanking Active TSS	Colon Smooth Muscle	Colon
11	chr10:61120000-61121000	Enhancers	Lung	lung
12	chr10:61120000-61121200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr10:61120000-61123000	Active TSS	Brain Substantia Nigra	brain
14	chr10:61120000-61123200	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr10:61120200-61121000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:61120200-61121000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:61120200-61121000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:61120200-61121000	Flanking Active TSS	Fetal Brain Male	brain
19	chr10:61120200-61121200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr10:61120200-61121200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr10:61120200-61121400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:61120200-61121400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:61120200-61121400	Enhancers	HMEC	breast
24	chr10:61120200-61121600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:61120200-61121600	Enhancers	NHDF-Ad	bronchial
26	chr10:61120400-61120800	Active TSS	Brain Cingulate Gyrus	brain
27	chr10:61120400-61120800	Enhancers	Fetal Lung	lung
28	chr10:61120400-61121000	Weak transcription	Spleen	Spleen
29	chr10:61120400-61121600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:61120400-61123200	Active TSS	Aorta	Aorta
31	chr10:61120400-61123400	Active TSS	Brain Anterior Caudate	brain
32	chr10:61120400-61123600	Active TSS	Brain Angular Gyrus	brain
33	chr10:61120400-61123600	Active TSS	Brain Hippocampus Middle	brain
34	chr10:61120400-61123600	Active TSS	Fetal Brain Female	brain
35	chr10:61120600-61120800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:61120600-61120800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:61120600-61120800	Flanking Active TSS	Esophagus	oesophagus
38	chr10:61120600-61120800	Flanking Active TSS	Fetal Muscle Trunk	muscle
39	chr10:61120600-61120800	Enhancers	Fetal Stomach	stomach
40	chr10:61120600-61120800	Flanking Active TSS	Right Atrium	heart
41	chr10:61120600-61120800	Flanking Active TSS	HSMMtube	muscle
42	chr10:61120600-61121000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:61120600-61121000	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr10:61120600-61121000	Flanking Active TSS	Left Ventricle	heart
45	chr10:61120600-61121000	Flanking Active TSS	Ovary	ovary
46	chr10:61120600-61121000	Flanking Active TSS	Psoas Muscle	Psoas
47	chr10:61120600-61121000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr10:61120600-61121200	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr10:61120600-61121200	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr10:61120600-61121600	Enhancers	NH-A	brain

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