Variant report

Variant	rs397014
Chromosome Location	chr10:61142485-61142486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1824429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1901179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284602	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284633	1.00[JPT][hapmap]
rs410191	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453670	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551149	chr10:61115114-61190125	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61133800-61147400	Weak transcription	Ovary	ovary
2	chr10:61136200-61147400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:61139400-61147600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:61141400-61142600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:61141800-61143600	Enhancers	Osteobl	bone
6	chr10:61142000-61143400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:61142000-61143600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:61142000-61143600	Enhancers	Brain Anterior Caudate	brain
9	chr10:61142000-61143600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:61142000-61143600	Enhancers	HSMMtube	muscle
11	chr10:61142000-61143800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:61142000-61143800	Enhancers	HSMM	muscle
13	chr10:61142000-61144200	Enhancers	NHLF	lung
14	chr10:61142200-61142800	Weak transcription	Fetal Stomach	stomach
15	chr10:61142200-61143200	Enhancers	Brain Hippocampus Middle	brain
16	chr10:61142200-61143200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:61142200-61143400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:61142200-61143600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:61142200-61143600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr10:61142200-61143600	Enhancers	NH-A	brain
21	chr10:61142200-61143600	Enhancers	NHDF-Ad	bronchial
22	chr10:61142200-61143800	Enhancers	Fetal Lung	lung
23	chr10:61142400-61143200	Enhancers	Fetal Heart	heart

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