Variant report

Variant	rs284610
Chromosome Location	chr10:61117018-61117019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:61116851-61117255	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61113110..61115229-chr10:61116306..61118405,2	K562	blood:

Variant related genes	Relation type
FAM13C	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1824429	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1901179	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284602	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284633	1.00[JPT][hapmap]
rs397014	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831888	chr10:60943655-61138251	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv467289	chr10:61075213-61139869	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv551148	chr10:61075213-61139869	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv551149	chr10:61115114-61190125	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61096400-61122000	Weak transcription	Gastric	stomach
2	chr10:61097400-61120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61097400-61121600	Weak transcription	Right Ventricle	heart
4	chr10:61099600-61120400	Weak transcription	Aorta	Aorta
5	chr10:61103000-61119200	Weak transcription	Fetal Brain Male	brain
6	chr10:61103000-61120200	Weak transcription	Brain Germinal Matrix	brain
7	chr10:61106400-61120200	Weak transcription	HSMMtube	muscle
8	chr10:61106600-61120200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:61109000-61122200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:61109600-61121600	Weak transcription	Colonic Mucosa	Colon
11	chr10:61110200-61118000	Weak transcription	Psoas Muscle	Psoas
12	chr10:61110200-61121600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:61110600-61118600	Weak transcription	Fetal Heart	heart
14	chr10:61110600-61120200	Weak transcription	Left Ventricle	heart
15	chr10:61112200-61118400	Weak transcription	Adipose Nuclei	Adipose
16	chr10:61112200-61120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:61112200-61120000	Weak transcription	Lung	lung
18	chr10:61112200-61120200	Weak transcription	Esophagus	oesophagus
19	chr10:61112200-61120400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:61112200-61120600	Weak transcription	Fetal Stomach	stomach
21	chr10:61113200-61118200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:61113400-61118200	Enhancers	Brain Substantia Nigra	brain
23	chr10:61113400-61118400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:61113600-61117400	Enhancers	Brain Angular Gyrus	brain
25	chr10:61113800-61117600	Enhancers	Brain Hippocampus Middle	brain
26	chr10:61113800-61118200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:61114000-61118400	Weak transcription	Ovary	ovary
28	chr10:61114600-61118000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:61114600-61118400	Weak transcription	Fetal Brain Female	brain
30	chr10:61114600-61118800	Weak transcription	Fetal Lung	lung
31	chr10:61114800-61121600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:61115200-61118800	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:61115200-61120600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:61116000-61118200	Enhancers	Brain Cingulate Gyrus	brain
35	chr10:61116400-61120000	Enhancers	Colon Smooth Muscle	Colon
36	chr10:61116600-61117400	Enhancers	Stomach Smooth Muscle	stomach
37	chr10:61116800-61117200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:61116800-61117400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:61116800-61118000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:61117000-61117400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:61117000-61118200	Weak transcription	Brain Anterior Caudate	brain
42	chr10:61117000-61120000	Weak transcription	Rectal Smooth Muscle	rectum

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