Variant report

Variant	rs4103870
Chromosome Location	chr12:10307080-10307081
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10305112..10307480-chr12:10310212..10312398,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34925630	0.87[EUR][1000 genomes]
rs6488266	0.82[EUR][1000 genomes]
rs73258637	0.82[EUR][1000 genomes]
rs7964641	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10306000-10307200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr12:10306000-10307200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr12:10306000-10307200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr12:10306200-10307200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr12:10306400-10313400	Weak transcription	Hela-S3	cervix
6	chr12:10306600-10307200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr12:10306800-10307200	Active TSS	Primary T cells from cord blood	blood
8	chr12:10306800-10307200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:10306800-10307200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
10	chr12:10306800-10307200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
11	chr12:10306800-10307200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr12:10307000-10307200	Bivalent/Poised TSS	Primary B cells from cord blood	blood
13	chr12:10307000-10307200	Enhancers	Primary hematopoietic stem cells	blood
14	chr12:10307000-10307200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:10307000-10307200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:10307000-10307200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:10307000-10307200	Enhancers	A549	lung
18	chr12:10307000-10307400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr12:10307000-10308200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:10307000-10309200	Weak transcription	Thymus	Thymus
21	chr12:10307000-10311400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:10307000-10312400	Weak transcription	Placenta	Placenta
23	chr12:10307000-10312800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr12:10307000-10313400	Weak transcription	Brain Anterior Caudate	brain
25	chr12:10307000-10318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:10307000-10319800	Weak transcription	Right Atrium	heart

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