Variant report

Variant	rs73258637
Chromosome Location	chr12:10306661-10306662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10305467..10306793-chr12:10342493..10344173,14	MCF-7	breast:
2	chr12:10305977..10306953-chr12:10328333..10329049,2	MCF-7	breast:
3	chr12:10305112..10307480-chr12:10310212..10312398,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10734818	1.00[ASN][1000 genomes]
rs10845052	1.00[ASN][1000 genomes]
rs17740817	1.00[ASN][1000 genomes]
rs34300167	1.00[ASN][1000 genomes]
rs34331959	0.82[AMR][1000 genomes]
rs34733039	1.00[ASN][1000 genomes]
rs34837900	0.82[AMR][1000 genomes]
rs34925630	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311664	1.00[ASN][1000 genomes]
rs35335503	1.00[ASN][1000 genomes]
rs35492478	1.00[ASN][1000 genomes]
rs35555206	0.82[AMR][1000 genomes]
rs35567600	0.82[AMR][1000 genomes]
rs35827587	0.82[AMR][1000 genomes]
rs4103870	0.82[EUR][1000 genomes]
rs6488266	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135302	1.00[ASN][1000 genomes]
rs73258633	1.00[ASN][1000 genomes]
rs7964641	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971656	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10305600-10307000	Active TSS	Brain Angular Gyrus	brain
2	chr12:10305600-10307000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr12:10305800-10306800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr12:10305800-10306800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
5	chr12:10305800-10306800	Active TSS	Brain Hippocampus Middle	brain
6	chr12:10305800-10306800	Active TSS	Fetal Kidney	kidney
7	chr12:10305800-10307000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:10305800-10307000	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr12:10305800-10307000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:10305800-10307000	Active TSS	Colon Smooth Muscle	Colon
11	chr12:10305800-10307000	Active TSS	Fetal Brain Female	brain
12	chr12:10305800-10307000	Active TSS	Right Ventricle	heart
13	chr12:10305800-10307000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr12:10305800-10307000	Active TSS	NH-A	brain
15	chr12:10306000-10306800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr12:10306000-10306800	Active TSS	H1 Cell Line	embryonic stem cell
17	chr12:10306000-10306800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr12:10306000-10306800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:10306000-10306800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr12:10306000-10306800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
21	chr12:10306000-10306800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr12:10306000-10306800	Active TSS	Aorta	Aorta
23	chr12:10306000-10306800	Active TSS	Brain Anterior Caudate	brain
24	chr12:10306000-10306800	Active TSS	Duodenum Mucosa	Duodenum
25	chr12:10306000-10306800	Active TSS	Fetal Heart	heart
26	chr12:10306000-10306800	Flanking Active TSS	Placenta	Placenta
27	chr12:10306000-10306800	Active TSS	Gastric	stomach
28	chr12:10306000-10306800	Active TSS	HSMM	muscle
29	chr12:10306000-10307000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:10306000-10307000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr12:10306000-10307000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr12:10306000-10307000	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr12:10306000-10307000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr12:10306000-10307000	Active TSS	Brain Cingulate Gyrus	brain
35	chr12:10306000-10307000	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr12:10306000-10307000	Active TSS	Fetal Intestine Large	intestine
37	chr12:10306000-10307000	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr12:10306000-10307000	Active TSS	Fetal Lung	lung
39	chr12:10306000-10307000	Active TSS	HSMMtube	muscle
40	chr12:10306000-10307000	Flanking Active TSS	HUVEC	blood vessel
41	chr12:10306000-10307200	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr12:10306000-10307200	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr12:10306000-10307200	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr12:10306200-10306800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr12:10306200-10306800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr12:10306200-10306800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr12:10306200-10306800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr12:10306200-10306800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr12:10306200-10306800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr12:10306200-10306800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links