Variant report

Variant	rs35492478
Chromosome Location	chr12:10319805-10319806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10734818	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845052	1.00[ASN][1000 genomes]
rs17740817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300167	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624528	1.00[EUR][1000 genomes]
rs34733039	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34925630	1.00[ASN][1000 genomes]
rs35311664	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35553961	1.00[EUR][1000 genomes]
rs57056622	1.00[EUR][1000 genomes]
rs6488266	1.00[ASN][1000 genomes]
rs7135302	1.00[ASN][1000 genomes]
rs73258633	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73258637	1.00[ASN][1000 genomes]
rs7964641	1.00[ASN][1000 genomes]
rs9971656	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10313800-10321800	Weak transcription	NHEK	skin
2	chr12:10317600-10320800	Enhancers	Placenta	Placenta
3	chr12:10318400-10321400	Weak transcription	NHLF	lung
4	chr12:10318600-10321800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:10318600-10321800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:10318800-10323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:10319000-10322800	Enhancers	Hela-S3	cervix
8	chr12:10319200-10320000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr12:10319200-10326200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr12:10319400-10321600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:10319600-10320800	Enhancers	Primary B cells from cord blood	blood
12	chr12:10319800-10320000	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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